PGAM5

Protein-coding gene in the species Homo sapiens
PGAM5
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

3MXO, 3O0T

Identifiers
AliasesPGAM5, BXLBV68, PGAM family member 5, mitochondrial serine/threonine protein phosphatase
External IDsOMIM: 614939; MGI: 1919792; HomoloGene: 14597; GeneCards: PGAM5; OMA:PGAM5 - orthologs
Gene location (Human)
Chromosome 12 (human)
Chr.Chromosome 12 (human)[1]
Chromosome 12 (human)
Genomic location for PGAM5
Genomic location for PGAM5
Band12q24.33Start132,710,819 bp[1]
End132,722,734 bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for PGAM5
Genomic location for PGAM5
Band5|5 FStart110,406,996 bp[2]
End110,417,779 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gastrocnemius muscle

  • mucosa of transverse colon

  • muscle of thigh

  • right adrenal gland

  • islet of Langerhans

  • right lobe of liver

  • appendix

  • left adrenal gland

  • right adrenal cortex

  • left adrenal cortex
Top expressed in
  • superior cervical ganglion

  • endocardial cushion

  • interventricular septum

  • mandibular prominence

  • neural tube

  • medial ganglionic eminence

  • barrel cortex

  • maxillary prominence

  • piriform cortex

  • subiculum
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • phosphatase activity
  • phosphoprotein phosphatase activity
  • hydrolase activity
  • GTPase activator activity
  • protein binding
  • protein-containing complex binding
  • protein serine/threonine phosphatase activity
Cellular component
  • integral component of membrane
  • membrane
  • mitochondrion
  • mitochondrial outer membrane
Biological process
  • protein dephosphorylation
  • necroptosis
  • programmed cell death
  • dephosphorylation
  • positive regulation of GTPase activity
  • macroautophagy
  • negative regulation of cold-induced thermogenesis
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

192111

72542

Ensembl

ENSG00000247077

ENSMUSG00000029500

UniProt

Q96HS1

Q8BX10

RefSeq (mRNA)

NM_138575
NM_001170543
NM_001170544

NM_001163538
NM_028273

RefSeq (protein)

NP_001164014
NP_001164015
NP_612642

NP_001157010
NP_082549

Location (UCSC)Chr 12: 132.71 – 132.72 MbChr 5: 110.41 – 110.42 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

PGAM family member 5 (PGAM5), also known as mitochondrial Serine/threonine-protein phosphatase PGAM5 is related to phosphoglycerate mutase family. It, in humans, is encoded by the PGAM5 gene on chromosome 12.[5][6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000247077 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000029500 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: PGAM5, PGAM family member 5".
  6. ^ "UniProtKB: Q96HS1".

External links

  • PDBe-KB provides an overview of all the structure information available in the PDB for Human Serine/threonine-protein phosphatase PGAM5, mitochondrial
PGAM family member 5, mitochondrial serine/threonine protein phosphatase
Identifiers
SymbolPGAM5
NCBI gene192111
PDB5MUF
UniProtQ96HS1
Other data
LocusChr. 12 q
Search for
StructuresSwiss-model
DomainsInterPro